Gene

Osativa LOC Os04g27050

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Osativa_LOC_Os04g27050
LOC_Os04g27050
Chr4 15999439 15999982 Phytozome v7.0 Oryza_sativa_Japonica_Group
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Osativa_LOC_Os04g27050.1
LOC_Os04g27050.1
PAC:24103660
Low No 321
Coding potential...
Type: noncoding Potential: -1.051
Folding energies...
MFEI: -45.950 AMFE: -0.683
GC content
%: 67.290


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Osativa_LOC_Os04g27050.1  RepBase (RepeatMasker) 2014-01-31 CACTA-P


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

LOC_Os04g27050.png