Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os05g08854 LOC_Os05g08854 |
Chr5 | 4886631 | 4890243 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os05g08854.1 LOC_Os05g08854.1 PAC:24154024 |
Low | No | 1752 | Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -30.651 AMFE: -0.665 GC content %: 46.119 | |
Osativa_LOC_Os05g08854.2 LOC_Os05g08854.2 PAC:24154025 |
Low | No | 1634 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -30.685 AMFE: -0.667 GC content %: 46.022 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os05g08854.1 | SwissProt | 2015-06-01 | Q9FMY1 | 3.0e-24 |
Osativa_LOC_Os05g08854.2 | SwissProt | 2015-06-01 | Q9FMY1 | 2.0e-24 |