Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os05g12080 LOC_Os05g12080 |
Chr5 | 6916166 | 6916516 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os05g12080.1 LOC_Os05g12080.1 PAC:24154204 |
Low | No | 351 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -49.031 AMFE: -0.711 GC content %: 68.946 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os05g12080.1 | RepBase (RepeatMasker) | 2014-01-31 | MERMITE18C |