GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os05g46140 LOC_Os05g46140	Chr5	26761777	26764812	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os05g46140.1 LOC_Os05g46140.1 PAC:24149588	High	No	968		Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -34.246 AMFE: -0.647 GC content %: 52.893
Osativa_LOC_Os05g46140.2 LOC_Os05g46140.2 PAC:24149589	High	No	1114		Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -33.259 AMFE: -0.655 GC content %: 50.808

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).