Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os08g12449 LOC_Os08g12449 |
Chr8 | 7363017 | 7367943 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os08g12449.4 LOC_Os08g12449.4 PAC:24098414 |
Low | No | 874 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -29.027 AMFE: -0.600 GC content %: 48.398 | |
Osativa_LOC_Os08g12449.5 LOC_Os08g12449.5 PAC:24098415 |
Low | No | 818 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -29.413 AMFE: -0.596 GC content %: 49.389 | |
Osativa_LOC_Os08g12449.6 LOC_Os08g12449.6 PAC:24098416 |
Low | No | 574 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -28.415 AMFE: -0.497 GC content %: 57.143 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os08g12449.4 | RepBase (RepeatMasker) | 2014-01-31 | SZ-36_LTR | |
Osativa_LOC_Os08g12449.5 | RepBase (RepeatMasker) | 2014-01-31 | SZ-36_LTR | |
Osativa_LOC_Os08g12449.6 | RepBase (RepeatMasker) | 2014-01-31 | SZ-36_LTR |