Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os08g31769 LOC_Os08g31769 |
Chr8 | 19693446 | 19698103 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os08g31769.1 LOC_Os08g31769.1 PAC:24099323 |
Low | No | 651 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -36.774 AMFE: -0.669 GC content %: 54.992 | |
Osativa_LOC_Os08g31769.2 LOC_Os08g31769.2 PAC:24099324 |
Low | No | 653 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -35.161 AMFE: -0.652 GC content %: 53.905 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os08g31769.2 | SwissProt | 2015-06-01 | Q9XIF0 | 7.0e-7 |
Osativa_LOC_Os08g31769.1 | SwissProt | 2015-06-01 | Q9XIF0 | 3.0e-6 |