GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os09g31220 LOC_Os09g31220	Chr9	18779534	18782252	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os09g31220.10 LOC_Os09g31220.10 PAC:24135650	High	No	2426		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -30.544 AMFE: -0.679 GC content %: 44.971
Osativa_LOC_Os09g31220.11 LOC_Os09g31220.11 PAC:24135651	High	No	2485		Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -30.036 AMFE: -0.674 GC content %: 44.547
Osativa_LOC_Os09g31220.13 LOC_Os09g31220.13 PAC:24135652	High	No	2406		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -30.420 AMFE: -0.676 GC content %: 45.012
Osativa_LOC_Os09g31220.7 LOC_Os09g31220.7 PAC:24135648	High	No	2397		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -30.559 AMFE: -0.678 GC content %: 45.056
Osativa_LOC_Os09g31220.9 LOC_Os09g31220.9 PAC:24135649	High	No	1450		Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -33.538 AMFE: -0.665 GC content %: 50.414

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).