Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Osativa_LOC_Os10g06020 LOC_Os10g06020 |
Chr10 | 3053586 | 3054001 | Phytozome | v7.0 | Oryza_sativa_Japonica_Group | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Osativa_LOC_Os10g06020.1 LOC_Os10g06020.1 PAC:24096389 |
Low | No | 273 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -33.077 AMFE: -0.695 GC content %: 47.619 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os10g06020.1 | RepBase (RepeatMasker) | 2014-01-31 | CACTA-O |