GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os10g42020 LOC_Os10g42020	Chr10	22587836	22592132	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os10g42020.2 LOC_Os10g42020.2 PAC:24094512	High	No	573		Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -35.131 AMFE: -0.699 GC content %: 50.262
Osativa_LOC_Os10g42020.3 LOC_Os10g42020.3 PAC:24094513	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -34.211 AMFE: -0.687 GC content %: 49.832

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).