GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os11g09864 LOC_Os11g09864	Chr11	5282058	5284700	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os11g09864.1 LOC_Os11g09864.1 PAC:24155460	High	No	2643		Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -26.443 AMFE: -0.634 GC content %: 41.695
Osativa_LOC_Os11g09864.2 LOC_Os11g09864.2 PAC:24155461	High	No	1392		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -27.263 AMFE: -0.574 GC content %: 47.486

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).