GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os11g38790 LOC_Os11g38790	Chr11	23063495	23064576	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os11g38790.1 LOC_Os11g38790.1 PAC:24157171	High	No	578		Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -31.073 AMFE: -0.653 GC content %: 47.578
Osativa_LOC_Os11g38790.2 LOC_Os11g38790.2 PAC:24157172	High	No	1082		Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -28.050 AMFE: -0.669 GC content %: 41.959

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).