GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Osativa_LOC_Os12g04204 LOC_Os12g04204	Chr12	1772557	1774719	Phytozome	v7.0	Oryza_sativa_Japonica_Group	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Osativa_LOC_Os12g04204.1 LOC_Os12g04204.1 PAC:24147566	High	No	2163		Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -26.602 AMFE: -0.645 GC content %: 41.239
Osativa_LOC_Os12g04204.2 LOC_Os12g04204.2 PAC:24147567	High	No	1806		Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -26.722 AMFE: -0.642 GC content %: 41.639
Osativa_LOC_Os12g04204.3 LOC_Os12g04204.3 PAC:24147568	High	No	1322		Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -25.446 AMFE: -0.620 GC content %: 41.074
Osativa_LOC_Os12g04204.4 LOC_Os12g04204.4 PAC:24147569	High	No	1552		Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -26.611 AMFE: -0.630 GC content %: 42.268
Osativa_LOC_Os12g04204.5 LOC_Os12g04204.5 PAC:24147570	High	No	1897		Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -27.069 AMFE: -0.647 GC content %: 41.856

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).