GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_10100 Pp3c10_10100	Chr10	6774321	6776653	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_10100V3.1 Pp3c10_10100V3.1 PAC:32900513	High	No	642		Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -31.526 AMFE: -0.668 GC content %: 47.196
Ppatens_Pp3c10_10100V3.2 Pp3c10_10100V3.2 PAC:32900514	High	No	548		Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -29.526 AMFE: -0.630 GC content %: 46.898
Ppatens_Pp3c10_10100V3.3 Pp3c10_10100V3.3 PAC:32900515	High	No	1676		Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -28.604 AMFE: -0.659 GC content %: 43.377
Ppatens_Pp3c10_10100V3.4 Pp3c10_10100V3.4 PAC:32900516	High	No	1762		Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -28.978 AMFE: -0.669 GC content %: 43.303
Ppatens_Pp3c10_10100V3.5 Pp3c10_10100V3.5 PAC:32900517	High	No	1825		Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -29.271 AMFE: -0.674 GC content %: 43.452

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).