GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_10420 Pp3c10_10420	Chr10	7032962	7033721	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_10420V3.1 Pp3c10_10420V3.1 PAC:32902249	High	No	243		Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -15.226 AMFE: -0.282 GC content %: 53.909
Ppatens_Pp3c10_10420V3.2 Pp3c10_10420V3.2 PAC:32902250	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -15.211 AMFE: -0.410 GC content %: 37.105

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).