GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_15920 Pp3c10_15920	Chr10	10767056	10769422	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_15920V3.1 Pp3c10_15920V3.1 PAC:32900726	Low	Yes	1198		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -34.132 AMFE: -0.694 GC content %: 49.165
Ppatens_Pp3c10_15920V3.2 Pp3c10_15920V3.2 PAC:32900727	Low	Yes	1204		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -33.522 AMFE: -0.696 GC content %: 48.173
Ppatens_Pp3c10_15920V3.3 Pp3c10_15920V3.3 PAC:32900728	Low	Yes	1346		Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -35.030 AMFE: -0.710 GC content %: 49.331
Ppatens_Pp3c10_15920V3.4 Pp3c10_15920V3.4 PAC:32900729	High	No	846		Get ORF Coding potential... Type: noncoding Potential: -0.732 Folding energies... MFEI: -31.466 AMFE: -0.691 GC content %: 45.508

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).