GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_18860 Pp3c10_18860	Chr10	13083661	13086255	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_18860V3.1 Pp3c10_18860V3.1 PAC:32899788	High	No	1109		Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -30.640 AMFE: -0.629 GC content %: 48.693
Ppatens_Pp3c10_18860V3.2 Pp3c10_18860V3.2 PAC:32899789	High	No	1324		Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -31.208 AMFE: -0.638 GC content %: 48.943
Ppatens_Pp3c10_18860V3.3 Pp3c10_18860V3.3 PAC:32899790	High	No	1366		Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -31.259 AMFE: -0.642 GC content %: 48.682

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).