GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_1980 Pp3c10_1980	Chr10	1726963	1728198	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_1980V3.1 Pp3c10_1980V3.1 PAC:32899875	High	No	339		Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -27.493 AMFE: -0.551 GC content %: 49.853
Ppatens_Pp3c10_1980V3.2 Pp3c10_1980V3.2 PAC:32899876	High	No	693		Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -26.234 AMFE: -0.570 GC content %: 46.032

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).