GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_20060 Pp3c10_20060	Chr10	13853366	13854964	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_20060V3.1 Pp3c10_20060V3.1 PAC:32900442	High	No	1227		Get ORF Coding potential... Type: noncoding Potential: -1.361 Folding energies... MFEI: -27.148 AMFE: -0.618 GC content %: 43.928
Ppatens_Pp3c10_20060V3.2 Pp3c10_20060V3.2 PAC:32900443	High	No	1599		Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -26.016 AMFE: -0.614 GC content %: 42.402

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).