GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_20660 Pp3c10_20660	Chr10	14199287	14200398	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_20660V3.1 Pp3c10_20660V3.1 PAC:32900948	High	No	555		Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -30.505 AMFE: -0.622 GC content %: 49.009
Ppatens_Pp3c10_20660V3.2 Pp3c10_20660V3.2 PAC:32900949	High	No	720		Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -27.375 AMFE: -0.622 GC content %: 44.028

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).