Gene
Ppatens Pp3c10 22060
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c10_22060 Pp3c10_22060 |
Chr10 | 15132022 | 15133620 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c10_22060V3.1 Pp3c10_22060V3.1 PAC:32901578 |
High | No | 580 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -28.897 AMFE: -0.582 GC content %: 49.655 | |
| Ppatens_Pp3c10_22060V3.2 Pp3c10_22060V3.2 PAC:32901579 |
High | No | 922 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -24.523 AMFE: -0.520 GC content %: 47.180 | |
| Ppatens_Pp3c10_22060V3.3 Pp3c10_22060V3.3 PAC:32901580 |
High | No | 1018 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -25.540 AMFE: -0.542 GC content %: 47.151 | |
| Ppatens_Pp3c10_22060V3.4 Pp3c10_22060V3.4 PAC:32901581 |
High | No | 1032 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -24.709 AMFE: -0.535 GC content %: 46.221 | |
| Ppatens_Pp3c10_22060V3.5 Pp3c10_22060V3.5 PAC:32901582 |
High | No | 1128 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -25.293 AMFE: -0.547 GC content %: 46.277 | |
| Ppatens_Pp3c10_22060V3.6 Pp3c10_22060V3.6 PAC:32901583 |
High | No | 570 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -27.281 AMFE: -0.568 GC content %: 48.070 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
