GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c10_7230 Pp3c10_7230	Chr10	4979486	4983251	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c10_7230V3.1 Pp3c10_7230V3.1 PAC:32901769	High	No	1157		Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -32.584 AMFE: -0.676 GC content %: 48.228
Ppatens_Pp3c10_7230V3.2 Pp3c10_7230V3.2 PAC:32901770	High	No	3471		Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -31.507 AMFE: -0.662 GC content %: 47.623
Ppatens_Pp3c10_7230V3.3 Pp3c10_7230V3.3 PAC:32901768	High	No	282		Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -24.965 AMFE: -0.446 GC content %: 56.028

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).