GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c11_18259 Pp3c11_18259	Chr11	12099356	12101206	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c11_18259V3.1 Pp3c11_18259V3.1 PAC:32958320	High	No	1161		Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -29.139 AMFE: -0.662 GC content %: 44.014
Ppatens_Pp3c11_18259V3.2 Pp3c11_18259V3.2 PAC:32958321	High	No	1481		Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -29.332 AMFE: -0.665 GC content %: 44.092

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).