Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c11_20270 Pp3c11_20270 |
Chr11 | 13504047 | 13505446 | Phytozome | v3.3 | Physcomitrella_patens | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c11_20270V3.1 Pp3c11_20270V3.1 PAC:32958208 |
Low | No | 1400 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -28.857 AMFE: -0.668 GC content %: 43.214 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c11_20270V3.1 | SwissProt | 2015-06-01 | Q38933 | 5.0e-7 |