GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c11_23790 Pp3c11_23790	Chr11	15616877	15618392	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c11_23790V3.1 Pp3c11_23790V3.1 PAC:32957664	High	No	1449		Get ORF Coding potential... Type: noncoding Potential: -0.516 Folding energies... MFEI: -16.708 AMFE: -0.815 GC content %: 20.497
Ppatens_Pp3c11_23790V3.2 Pp3c11_23790V3.2 PAC:32957665	High	No	949		Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -16.596 AMFE: -0.812 GC content %: 20.443

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).