GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c11_25150 Pp3c11_25150	Chr11	16395253	16397093	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c11_25150V3.1 Pp3c11_25150V3.1 PAC:32957056	High	No	930		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -31.398 AMFE: -0.674 GC content %: 46.559
Ppatens_Pp3c11_25150V3.2 Pp3c11_25150V3.2 PAC:32957057	High	No	878		Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -31.925 AMFE: -0.669 GC content %: 47.722

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).