GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c11_7470 Pp3c11_7470	Chr11	4822942	4823724	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c11_7470V3.1 Pp3c11_7470V3.1 PAC:32958064	High	No	783		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -37.676 AMFE: -0.651 GC content %: 57.854
Ppatens_Pp3c11_7470V3.2 Pp3c11_7470V3.2 PAC:32958065	High	No	345		Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -43.507 AMFE: -0.685 GC content %: 63.478

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).