GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c11_980 Pp3c11_980	Chr11	438256	440446	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c11_980V3.1 Pp3c11_980V3.1 PAC:32956474	High	No	817		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -30.918 AMFE: -0.639 GC content %: 48.348
Ppatens_Pp3c11_980V3.2 Pp3c11_980V3.2 PAC:32956475	High	No	834		Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -31.823 AMFE: -0.647 GC content %: 49.161
Ppatens_Pp3c11_980V3.3 Pp3c11_980V3.3 PAC:32956476	High	No	1235		Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -29.822 AMFE: -0.634 GC content %: 47.045
Ppatens_Pp3c11_980V3.4 Pp3c11_980V3.4 PAC:32956477	High	No	1301		Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -32.037 AMFE: -0.668 GC content %: 47.963
Ppatens_Pp3c11_980V3.5 Pp3c11_980V3.5 PAC:32956478	High	No	772		Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -31.127 AMFE: -0.643 GC content %: 48.446

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).