Gene
Ppatens Pp3c11 9830
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c11_9830 Pp3c11_9830 |
Chr11 | 6316605 | 6319179 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c11_9830V3.1 Pp3c11_9830V3.1 PAC:32958929 |
High | No | 1302 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -26.167 AMFE: -0.646 GC content %: 40.476 | |
| Ppatens_Pp3c11_9830V3.10 Pp3c11_9830V3.10 PAC:32958928 |
High | No | 840 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -26.238 AMFE: -0.646 GC content %: 40.595 | |
| Ppatens_Pp3c11_9830V3.2 Pp3c11_9830V3.2 PAC:32958922 |
High | No | 1368 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -25.885 AMFE: -0.645 GC content %: 40.132 | |
| Ppatens_Pp3c11_9830V3.3 Pp3c11_9830V3.3 PAC:32958923 |
High | No | 1509 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -25.600 AMFE: -0.636 GC content %: 40.225 | |
| Ppatens_Pp3c11_9830V3.4 Pp3c11_9830V3.4 PAC:32958924 |
High | No | 1593 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -26.328 AMFE: -0.652 GC content %: 40.364 | |
| Ppatens_Pp3c11_9830V3.5 Pp3c11_9830V3.5 PAC:32958925 |
High | No | 1630 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -25.926 AMFE: -0.645 GC content %: 40.184 | |
| Ppatens_Pp3c11_9830V3.6 Pp3c11_9830V3.6 PAC:32958926 |
High | No | 1744 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -25.591 AMFE: -0.643 GC content %: 39.794 | |
| Ppatens_Pp3c11_9830V3.7 Pp3c11_9830V3.7 PAC:32958930 |
High | No | 1141 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -25.951 AMFE: -0.637 GC content %: 40.754 | |
| Ppatens_Pp3c11_9830V3.8 Pp3c11_9830V3.8 PAC:32958931 |
High | No | 1419 | Get ORF Coding potential... Type: noncoding Potential: -1.351 Folding energies... MFEI: -25.511 AMFE: -0.637 GC content %: 40.028 | |
| Ppatens_Pp3c11_9830V3.9 Pp3c11_9830V3.9 PAC:32958927 |
High | No | 808 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -26.708 AMFE: -0.658 GC content %: 40.594 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
