GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_10970 Pp3c12_10970	Chr12	7378246	7379900	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_10970V3.1 Pp3c12_10970V3.1 PAC:32973576	High	No	504		Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -23.849 AMFE: -0.695 GC content %: 34.325
Ppatens_Pp3c12_10970V3.2 Pp3c12_10970V3.2 PAC:32973577	High	No	1425		Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -29.874 AMFE: -0.645 GC content %: 46.316

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).