GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_10980 Pp3c12_10980	Chr12	7385858	7388221	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_10980V3.1 Pp3c12_10980V3.1 PAC:32973946	High	No	2095		Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -26.979 AMFE: -0.669 GC content %: 40.334
Ppatens_Pp3c12_10980V3.2 Pp3c12_10980V3.2 PAC:32973947	High	No	1846		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -25.731 AMFE: -0.601 GC content %: 42.795

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).