Gene
Ppatens Pp3c12 11360
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c12_11360 Pp3c12_11360 |
Chr12 | 7575678 | 7576889 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c12_11360V3.1 Pp3c12_11360V3.1 PAC:32974998 |
High | No | 1014 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -25.493 AMFE: -0.586 GC content %: 43.491 | |
| Ppatens_Pp3c12_11360V3.2 Pp3c12_11360V3.2 PAC:32975000 |
High | No | 1018 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -25.088 AMFE: -0.593 GC content %: 42.338 | |
| Ppatens_Pp3c12_11360V3.3 Pp3c12_11360V3.3 PAC:32974999 |
High | No | 753 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -26.282 AMFE: -0.584 GC content %: 45.020 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
