GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_12890 Pp3c12_12890	Chr12	8661519	8662112	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_12890V3.1 Pp3c12_12890V3.1 PAC:32973444	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -30.881 AMFE: -0.574 GC content %: 53.774
Ppatens_Pp3c12_12890V3.2 Pp3c12_12890V3.2 PAC:32973445	High	No	594		Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -25.556 AMFE: -0.569 GC content %: 44.949

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).