GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_21890 Pp3c12_21890	Chr12	14543317	14545196	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_21890V3.1 Pp3c12_21890V3.1 PAC:32974876	High	No	1483		Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -26.271 AMFE: -0.586 GC content %: 44.842
Ppatens_Pp3c12_21890V3.2 Pp3c12_21890V3.2 PAC:32974877	High	No	855		Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -28.316 AMFE: -0.593 GC content %: 47.719

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).