GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_3510 Pp3c12_3510	Chr12	2771492	2772798	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_3510V3.1 Pp3c12_3510V3.1 PAC:32973165	High	No	997		Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -31.836 AMFE: -0.686 GC content %: 46.439
Ppatens_Pp3c12_3510V3.2 Pp3c12_3510V3.2 PAC:32973166	High	No	1307		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -31.806 AMFE: -0.688 GC content %: 46.213

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).