GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_9120 Pp3c12_9120	Chr12	6332657	6334435	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_9120V3.1 Pp3c12_9120V3.1 PAC:32972546	High	No	1779		Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -29.550 AMFE: -0.696 GC content %: 42.440
Ppatens_Pp3c12_9120V3.2 Pp3c12_9120V3.2 PAC:32972547	High	No	1358		Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -29.941 AMFE: -0.655 GC content %: 45.729
Ppatens_Pp3c12_9120V3.3 Pp3c12_9120V3.3 PAC:32972548	High	No	1493		Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -30.831 AMFE: -0.667 GC content %: 46.216

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).