GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_9760 Pp3c12_9760	Chr12	6667240	6668581	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_9760V3.1 Pp3c12_9760V3.1 PAC:32973479	High	No	1342		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -29.203 AMFE: -0.617 GC content %: 47.317
Ppatens_Pp3c12_9760V3.2 Pp3c12_9760V3.2 PAC:32973480	High	No	228		Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -19.912 AMFE: -0.391 GC content %: 50.877

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).