GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c12_9990 Pp3c12_9990	Chr12	6861695	6863425	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c12_9990V3.1 Pp3c12_9990V3.1 PAC:32973002	High	No	1227		Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -28.835 AMFE: -0.659 GC content %: 43.765
Ppatens_Pp3c12_9990V3.2 Pp3c12_9990V3.2 PAC:32973003	High	No	708		Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -27.020 AMFE: -0.609 GC content %: 44.350

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).