GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c13_13560 Pp3c13_13560	Chr13	10047643	10049514	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c13_13560V3.1 Pp3c13_13560V3.1 PAC:32930875	High	No	1848		Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -30.731 AMFE: -0.683 GC content %: 44.968
Ppatens_Pp3c13_13560V3.2 Pp3c13_13560V3.2 PAC:32930876	High	No	1872		Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -30.550 AMFE: -0.683 GC content %: 44.712

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).