GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c13_14260 Pp3c13_14260	Chr13	10549790	10550489	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c13_14260V3.1 Pp3c13_14260V3.1 PAC:32930907	High	No	583		Get ORF Coding potential... Type: noncoding Potential: -1.404 Folding energies... MFEI: -22.213 AMFE: -0.558 GC content %: 39.794
Ppatens_Pp3c13_14260V3.2 Pp3c13_14260V3.2 PAC:32930906	High	No	700		Get ORF Coding potential... Type: noncoding Potential: -1.416 Folding energies... MFEI: -22.557 AMFE: -0.564 GC content %: 40.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).