GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c13_15240 Pp3c13_15240	Chr13	11098646	11100585	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c13_15240V3.1 Pp3c13_15240V3.1 PAC:32930254	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -29.329 AMFE: -0.637 GC content %: 46.053
Ppatens_Pp3c13_15240V3.2 Pp3c13_15240V3.2 PAC:32930255	High	No	1733		Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -30.508 AMFE: -0.676 GC content %: 45.124

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).