GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c13_21570 Pp3c13_21570	Chr13	15127091	15129118	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c13_21570V3.1 Pp3c13_21570V3.1 PAC:32932486	High	No	1578		Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -29.075 AMFE: -0.669 GC content %: 43.473
Ppatens_Pp3c13_21570V3.2 Pp3c13_21570V3.2 PAC:32932487	High	No	1665		Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -29.123 AMFE: -0.669 GC content %: 43.544
Ppatens_Pp3c13_21570V3.3 Pp3c13_21570V3.3 PAC:32932488	High	No	781		Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -31.357 AMFE: -0.678 GC content %: 46.223

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).