GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c13_2240 Pp3c13_2240	Chr13	1372057	1373571	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c13_2240V3.1 Pp3c13_2240V3.1 PAC:32932400	High	No	866		Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -28.730 AMFE: -0.662 GC content %: 43.418
Ppatens_Pp3c13_2240V3.2 Pp3c13_2240V3.2 PAC:32932401	High	No	1197		Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -28.454 AMFE: -0.669 GC content %: 42.523
Ppatens_Pp3c13_2240V3.3 Pp3c13_2240V3.3 PAC:32932402	High	No	932		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -28.702 AMFE: -0.662 GC content %: 43.348
Ppatens_Pp3c13_2240V3.4 Pp3c13_2240V3.4 PAC:32932404	High	No	1223		Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -28.128 AMFE: -0.664 GC content %: 42.355
Ppatens_Pp3c13_2240V3.5 Pp3c13_2240V3.5 PAC:32932403	High	No	1043		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -28.984 AMFE: -0.660 GC content %: 43.912

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).