GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_1010 Pp3c14_1010	Chr14	680082	682579	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_1010V3.1 Pp3c14_1010V3.1 PAC:32962163	High	No	1678		Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -28.737 AMFE: -0.650 GC content %: 44.219
Ppatens_Pp3c14_1010V3.2 Pp3c14_1010V3.2 PAC:32962164	High	No	696		Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -26.739 AMFE: -0.598 GC content %: 44.684

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).