GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_10530 Pp3c14_10530	Chr14	6669443	6671019	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_10530V3.1 Pp3c14_10530V3.1 PAC:32962953	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -29.642 AMFE: -0.549 GC content %: 53.964
Ppatens_Pp3c14_10530V3.2 Pp3c14_10530V3.2 PAC:32962954	High	No	1173		Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -31.620 AMFE: -0.609 GC content %: 51.918

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).