GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_14730 Pp3c14_14730	Chr14	9323630	9324446	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_14730V3.1 Pp3c14_14730V3.1 PAC:32961228	High	No	273		Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -21.905 AMFE: -0.490 GC content %: 44.689
Ppatens_Pp3c14_14730V3.2 Pp3c14_14730V3.2 PAC:32961229	High	No	572		Get ORF Coding potential... Type: noncoding Potential: -1.367 Folding energies... MFEI: -24.878 AMFE: -0.586 GC content %: 42.483

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).