GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_18790 Pp3c14_18790	Chr14	12529323	12531054	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_18790V3.1 Pp3c14_18790V3.1 PAC:32962400	High	No	1732		Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -31.109 AMFE: -0.669 GC content %: 46.478
Ppatens_Pp3c14_18790V3.2 Pp3c14_18790V3.2 PAC:32962401	High	No	559		Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -28.354 AMFE: -0.600 GC content %: 47.227

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).