GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_22690 Pp3c14_22690	Chr14	14536573	14538632	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_22690V3.1 Pp3c14_22690V3.1 PAC:32961815	High	No	650		Get ORF Coding potential... Type: noncoding Potential: -0.619 Folding energies... MFEI: -31.431 AMFE: -0.672 GC content %: 46.769
Ppatens_Pp3c14_22690V3.2 Pp3c14_22690V3.2 PAC:32961816	High	No	631		Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -29.525 AMFE: -0.665 GC content %: 44.374
Ppatens_Pp3c14_22690V3.3 Pp3c14_22690V3.3 PAC:32961814	High	No	1047		Get ORF Coding potential... Type: noncoding Potential: -0.667 Folding energies... MFEI: -28.768 AMFE: -0.683 GC content %: 42.120

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).