GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_3220 Pp3c14_3220	Chr14	2158009	2159575	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_3220V3.1 Pp3c14_3220V3.1 PAC:32962622	High	No	1341		Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -29.381 AMFE: -0.639 GC content %: 46.010
Ppatens_Pp3c14_3220V3.2 Pp3c14_3220V3.2 PAC:32962623	High	No	1567		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -28.647 AMFE: -0.639 GC content %: 44.799

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).