GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_6499 Pp3c14_6499	Chr14	4467580	4470497	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_6499V3.1 Pp3c14_6499V3.1 PAC:32961734	High	No	2228		Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -30.085 AMFE: -0.677 GC content %: 44.434
Ppatens_Pp3c14_6499V3.2 Pp3c14_6499V3.2 PAC:32961735	High	No	2697		Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -28.914 AMFE: -0.663 GC content %: 43.641
Ppatens_Pp3c14_6499V3.3 Pp3c14_6499V3.3 PAC:32961736	High	No	2281		Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -30.096 AMFE: -0.680 GC content %: 44.279

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).