GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_7780 Pp3c14_7780	Chr14	5118147	5118629	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_7780V3.1 Pp3c14_7780V3.1 PAC:32962278	High	No	201		Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -32.886 AMFE: -0.606 GC content %: 54.229
Ppatens_Pp3c14_7780V3.2 Pp3c14_7780V3.2 PAC:32962279	High	No	483		Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -31.201 AMFE: -0.633 GC content %: 49.275

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).